MIMIC-III (The Medical Information Mart for Intensive Care III)

Introduced by Johnson et al. in MIMIC-III, a freely accessible critical care database

The Medical Information Mart for Intensive Care III (MIMIC-III) dataset is a large, de-identified and publicly-available collection of medical records. Each record in the dataset includes ICD-9 codes, which identify diagnoses and procedures performed. Each code is partitioned into sub-codes, which often include specific circumstantial details. The dataset consists of 112,000 clinical reports records (average length 709.3 tokens) and 1,159 top-level ICD-9 codes. Each report is assigned to 7.6 codes, on average. Data includes vital signs, medications, laboratory measurements, observations and notes charted by care providers, fluid balance, procedure codes, diagnostic codes, imaging reports, hospital length of stay, survival data, and more.

The database supports applications including academic and industrial research, quality improvement initiatives, and higher education coursework.

Source: MIT Laboratory for Computational Biology

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Benchmarks

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Task	Dataset Variant	Best Model
Medical Code Prediction	MIMIC-III	MSMN+KEPTLongformer
Mortality Prediction	MIMIC-III	Random Forest
Length-of-Stay prediction	MIMIC-III	EHR-Graph Transformer
Multivariate Time Series Forecasting	MIMIC-III	GraFITi
Multi-Label Text Classification	MIMIC-III	HLAN
Blood pressure estimation	MIMIC-III	Deep RNN
Multi-Label Classification Of Biomedical Texts	MIMIC-III	Convolutional Neural Network with per-label Attention
Hypertension detection	MIMIC-III	MiniROCKET